Flint, S. J. 2009. Principles of Virology. 3rd ed. Washington, DC: ASM Press.
Holmes, E. C., and A. Rambaut. 2004. Viral evolution and the emergence of SARS coronavirus. Philosophical Transactions of the Royal Society B: Biological Sciences359:1059–65.
Arden, K. E., and I. M. Mackay. 2009. Human rhinoviruses: Coming in from the cold. Genome Medicine1:44.
Worobey, M., M. Gemmel, D. E. Teuwen, et al. 2008. Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. Nature455:661–64.
Deresinski, S. 2009. Bacteriophage therapy: Exploiting smaller fleas.Clinical Infectious Diseases48:1096–101.
Keele, B. F. 2006. Chimpanzee reservoirs of pandemic and nonpandemic HIV-1. Science313:523–26.
Reardon, S. 2014. “Forgotten” NIH smallpox virus languishes on death row. Nature514:544.
Rohwer, F., M. Youle, H. Maughan, and N. Hisakawa. 2015. Life in OurPhage World. San Diego: Wholon.
García-Vallvé, S., Á. Alonso, and I. G. Bravo. 2005. Papillomaviruses:Different genes have different histories. Trends in Microbiology13:514–21.
Weiss, R. A. 2013. On the concept and elucidation of endogenous retroviruses. Philosophical Transactions of the Royal SocietyB: Biological Sciences368:20120494.
引言 有传染性的活液
Jacobs, B. L., J. O. Langland, K. V. Kibler, et al. 2009. Vaccinia virus vaccines: Past, present and future. Antiviral Research84:1–13.
Taubenberger, J. K., and D. M. Morens. 2008. The pathology of influenza virus infections. Annual Reviews of Pathology3:499–522.
Ogata, H., and J. M. Claverie. 2008. How to infect a mimivirus. Science321:1305.
Rohwer, F., and R. Vega Thurber. 2009. Viruses manipulate the marine environment. Nature459:207–12.
Keen, E.C. 2015. A century of phage research: Bacteriophages and the shaping of modern biology. Bioessays37:6–9.
Ruprecht, K., J. Mayer, M. Sauter, K. Roemer, and N. Mueller-Lantzsch.2008. Endogenous retroviruses and cancer. Cellular and MolecularLife Sciences65:3366–82.
Raj, V. S., A. D. Osterhaus, R. A. Fouchier, and B. L. Haagmans. 2014.MERS: Emergence of a novel human coronavirus. Current Opinion inVirology5:58–62.
6 人体里的“寄生者”
5 感染的海洋
Shchelkunov, S. N. 2009. How long ago did smallpox virus emerge? Archives of Virology154:1865–71.99lib.net
Horvath, C. A. J., G. A. V. Boulet, V. M. Renoux, P. O. Delvenne, and J.-P.J. Bogers. 2010. Mechanisms of cell entry by human papillomaviruses:An overview. Virology Journal7:11.
Kay, L. E. 1986. W. M. Stanley's crystallization of the tobacco mosaic virus, 1930–1940. Isis77:450–72.
Willner D., M. Furlan, M. Haynes, et al. 2009. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and noncystic fibrosis individuals.PLoS ONE4(10):e7370.
Pigott, D. M., N. Golding, A. Mylne, et al. 2014. Mapping the zoonotic niche of Ebola virus disease in Africa. Elife3:e04395.
Koonin, E. V., and V. V. Dolja. 2014. Virus world as an evolutionary network of viruses and capsidless selfish elements.Microbiology andMolecular Biology Reviews78:278–303.
Brault, A. C. 2009. Changing patterns of West Nile virus transmission:Altered vector competence and host susceptibility. Veterinary Research40:43.
2 祈求星星的照看
9 预测下一场瘟疫
Moreira, D., and P. Lopez-Garcia. 2009. Ten reasons to exclude viruses from the tree of life. Nature Reviews Microbiology7:306–11.
Wimmer, E. 2006. The test-tube synthesis of a chemical called poliovirus.EMBO Reports7:S3–9.
Dugan, V. G., R. Chen, D. J. Spiro, et al. 2008. The evolutionary genetics and emergence of avian influenza viruses in wild birds.PLoS Pathogens4(5):e1000076.
Smith, G. J. D., D. Vijaykrishna, J. Bahl, et al. 2009. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature459:1122–25.
Lee, A., A. Nolan, J. Watson, and M. Tristem. 2013. Identification of an ancient endogenous retrovirus, predating the divergence of the placental mammals. Philosophical Transactions of the Royal SocietyB:Biological Sciences368:20120503.
Kosuri, S., and G. M. Church. 2014. Large-scale de novo DNA synthesis:Technologies and applications. Nature Methods11:499–507.
Desnues, C., B. Rodriguez-Brito, S. Rayhawk, et al. 2008. Biodiversity and biogeography of phages in modern stromatolites and thrombolites.Nature452:340–43.
Forterre, P. 2010. Defining life: The virus viewpoint.Origins of Life andEvolution of Biospheres40:151–60.九九藏书
Fashner, J., K. Ericson, and S. Werner. 2012. Treatment of the common cold in children and adults. American Family Physician86:153–59.
Bravo, I. G., and Á. Alonso. 2006. Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins. Virus Genes34:249–62.
Brussaard, C. P. D., S. W. Wilhelm, F. Thingstad, et al. 2008. Global-scale processes with a nanoscale drive: The role of marine viruses. ISMEJournal2:575–78.
Raoult, D., and P. Forterre. 2008. Redefining viruses: Lessons from mimivirus. Nature Reviews Microbiology6:315–19.
Hamer, G. L, U. D. Kitron, T. L. Goldberg, et al. 2009. Host selection by Culex pipiens mosquitoes and West Nile virus amplification.AmericanJournal of Tropical Medicine and Hygiene80:268.
Abrahão, J. S., F. P. Dornas, L. C. F. Silva, et al 2014. Acanthamoeba polyphaga mimivirus and other giant viruses: an open field to outstanding discoveries. Virology Journal11:120.
Jern, P., and J. M. Coffin. 2008. Effects of retroviruses on host genome function. Annual Review of Genetics42:709–32.
Fan, H. 2011. AIDS: Science and Society. 6th ed. Sudbury, MA: Jones and Bartlett.
Briese, T., N. Renwick, M. Venter, et al. 2008. Global distribution of novel rhinovirus genotype. Emerging Infectious Diseases14:944.
Gould, E. A., and S. Higgs. 2009. Impact of climate change and other factors on emerging arbovirus diseases. Transactions of the Royal Society of Tropical Medicine and Hygiene103:109–21.
7 新的灾难
D'arca, M., A. Ayoubaa, A. Estebana, et al. 2015. Origin of the HIV-1 group O epidemic in western lowland gorillas. Proceedings of the National Academy of SciencesPublished ahead of print, March 2, 2015.doi:10.1073/pnas.1502022112.
Adhya, S., C. R. Merril, and B. Biswas. 2014. Therapeutic and prophylactic applications of bacteriophage components in modern medicine. Cold Spring Harbor Perspectives in Medicine4:a012518.
Martin, D., and J. S. Gutkind. 2008. Human tumor-associated viruses and new insights into the molecular mechanisms of cancer. Oncogene27(Suppl2):S31–42.
WHO Ebola Response Team. 2014. Ebola virus disease in West Africa—the first 9 months of the epidemic and forward projections.New England Journal of Medicine371:1481–95.
Koplow, D. A. 2003. Smallpox: The Fight to Eradicate a Global Scourge.Berkeley: University of California Press.
Diamond, M. S. 2009. Progress on the development of therapeutics against West Nile virus. Antiviral Research83:214–27.
García-Vallvé, S., J. R. Iglesias-Rozas, Á. Alonso, and I. G. Bravo. 2006. Different papillomaviruses have different repertoires of transcription factor binding sites: Convergence and divergence in the upstream regulatory region. BMC Evolutionary Biology6:20.
3 长角的兔子
尾声 冷却塔中的“外来客”
Mariner, J. C., J. A. House, C. A. Mebus, et al. 2012. Rinderpest eradication: Appropriate technology and social innovations. Science337:1309–12.
Sfakianos, J. N. 2009. West Nile Virus. 2nd ed. New York: Chelsea House.
Angly, F. E., B. Felts, M. Breitbart, et al. 2006. The marine viromes of four oceanic regions. PLoS Biology4 (11):e368.
Gilbert, M. T. P., A. Rambaut, G. Wlasiuk, T. J. Spira, A. E. Pitchenik,and M. Worobey. 2007. The emergence of HIV/AIDS in the Americas and beyond. Proceedings of the National Academy of Sciences104:18566.
Raoult, D., B. La Scola, and R. Birtles. 2007. The discovery and characterization of mimivirus, the largest known virus and putative pneumonia agent. Clinical Infectious Diseases45:95–102.
Weiss, R. A. 2006. The discovery of endogenous retroviruses. Retrovirology3:67.
Van Etten, J. L., L. C. Lane, and R. H. Meints. 1991. Viruses and viruslike particles of eukaryotic algae. Microbiology and Molecular Biology Reviews55:586.
Lavialle, C., G. Cornelis, A. Dupressoir, et al. 2013. Paleovirology of“syncytins,” retroviral env genes exapted for a role in placentation.Philosophical Transactions of the Royal SocietyB: Biological Sciences368:20120507.
Schiffman, M., R. Herrero, R. DeSalle, et al. 2005. The carcinogenicity of human papillomavirus types reflects viral evolution.Virology337:76–84.
Skowronski, D. M., C. Astell, R. C. Brunham, et al. 2005. Severe acute respiratory syndrome (SARS): A year in review. Annual Review ofMedicine56:357–81.
8 融入美国
Claverie, J. M., and C. Abergel. 2013. Open questions about giant viruses.Advances in Virus Research85:25-56.99lib.net
Montagnier, L. 2010. 25 Years after HIV discovery: Prospects for cure and vaccine. Virology397:248–54.
Dewannieux, M., F. Harper, A. Richaud, et al. 2006. Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Research16:1548–56.
Breitbart, M. 2012. Marine viruses: Truth or dare. Annual Review of Marine Sciences4:425–48.
Katzourakis, A., and A. Aswad. 2014. The origins of giant viruses,virophages and their relatives in host genomes. BMC Biology12:51.
1 并不普通的感冒
10 漫长的告别
Palmenberg, A. C., D. Spiro, R. Kuzmickas, et al. 2009. Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. Science324:55–59.
Orlando, P. A., R. A. Gatenby, A. R. Giuliano, and J. S. Brown.2012. Evolutionary ecology of human papillomavirus: trade-offs,coexistence, and origins of high-risk and low-risk types. Journal ofInfectious Diseases205:272–79.
Danovaro, R., A. Dell'Anno, C. Corinaldesi, et al. 2008. Major viral impact on the functioning of benthic deep-sea ecosystems. Nature454:1084–87.
Parrish, C. R., E. C. Holmes, D. M. Morens, et al. 2008. Cross-species virus transmission and the emergence of new epidemic diseases. Microbiology and Molecular Biology Reviews72:457–70.
Rambaut, A., O. G. Pybus, M. I. Nelson, C. Viboud, J. K. Taubenberger,and E.C. Holmes. 2008. The genomic and epidemiological dynamics of human influenza A virus.Nature453:615–19.
Doorbar, J. 2006. Molecular biology of human papillomavirus infection and cervical cancer. Clinical Science110:525.
Faria, N. R., A. Rambaut, M. A. Suchard, et al. 2014. The early spread and epidemic ignition of HIV-1 in human populations. Science346:56–61.
Kennedy, R. B., I. Ovsyannikova, and G. A. Poland. 2009. Smallpox vaccines for biodefense. Vaccine27 (Suppl):D73–79.
Bos, L. 1999. Beijerinck's work on tobacco mosaic virus: Historical context and legacy. Philosophical Transactions of the Royal Society B:Biological Sciences354:675.
Shulzhenko, N., H. Lyng, G. F. Sanson, and A. Morgun. 2014. Ménage à trois: An evolutionary interplay between human papillomavirus, a tumor, and a woman. Trends in Microbiology22:345–53.
Dormitzer, P. R., P. Suphaphiphat, D. G. Gibson, et al. 2013. Synthetic generation of influenza vaccine viruses for rapid response to pandemics. Science Translational Medicine5:185ra68.九九藏书网
Forterre, P., M. Krupovic, and D. Prangishvili. 2014. Cellular domains and viral lineages. Trends in Microbiology22:554–58.
Hughes, A. L., S. Irausquin, and R. Friedman. 2010. The evolutionary biology of poxviruses. Infection, Genetics and Evolution10:50–59.
Blikstad, V., F. Benachenhou, G. O. Sperber, and J. Blomberg. 2008.Evolution of human endogenous retroviral sequences: A conceptual account. Cellular and Molecular Life Sciences65:3348–65.
Damon, I. K., C. R. Damaso, and G. McFadden. 2014. Are we there yet?The smallpox research agenda using variola virus. PLoS Pathogens10:e1004108.
Venkatesan M., and J. L. Rasgon. 2010. Population genetic data suggest a role for mosquito-mediated dispersal of West Nile virus across the western United States. Molecular Ecology19:1573–84.
Moreira, D., and C. Brochier-Armanet. 2008. Giant viruses, giant chimeras: The multiple evolutionary histories of mimivirus genes.BMC Evolutionary Biology8:12.
Piot, P. 2013. No Time to Lose: A Life in Pursuit of Deadly Viruses. New York: W. W. Norton.
Suttle, C. A. 2007. Marine viruses—major players in the global ecosystem. Nature Reviews Microbiology5:801–12.
Brussow, H. 2005. Phage therapy: The Escherichia coli experience. Microbiology151:2133.
Wolfe, N. 2009. Preventing the next pandemic. Scientific America, April 2009, 76–81.
Sack, K., S. Fink, P. Belluck, and A. Nossiter. 2014. Ebola's deadline escape. New York Times, December 30, 2014, D1.
Tarlinton, R., J. Meers, and P. Young. 2008. Biology and evolution of the endogenous koala retrovirus. Cellular and Molecular Life Sciences65:3413–21.
4 敌人的敌人
Barry, J. M. 2004. The Great Influenza: The Epic Story of the Deadliest Plague in History. New York: Viking.
Quammen, D. 2012. Spillover: Animal Infections and the Next Human Pandemic. New York: W. W. Norton.
Fauci, A. S., and H. D. Marston. 2014. Ending AIDS–is an HIV vaccine necessary? New England Journal of Medicine370:495–98.
Summers, W. C. 2001. Bacteriophage therapy. Annual Reviews in Microbiology55:437–51.